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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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281 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD3
ENSSSCG00000028010
ENSG00000158201
Abhydrolase domain containing 3
Tissue enhanced
Detected in all
choroid plexus:
71.1
ABT1
ENSSSCG00000038191
ENSG00000146109
Activator of basal transcription 1
Low tissue specificity
Detected in all
ACSM5
ENSSSCG00000026453
ENSG00000183549
Acyl-CoA synthetase medium chain family member 5
Low tissue specificity
Detected in all
ADCY8
ENSSSCG00000031717
ENSG00000155897
Adenylate cyclase 8
Tissue enhanced
Detected in all
upper respiratory system:
30.9
ADM5
ENSSSCG00000032629
ADM5 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
22.4
AGBL3
ENSSSCG00000016529
ENSG00000146856
ATP/GTP binding protein like 3
Tissue enhanced
Detected in all
testis:
46.4
ALG13
ENSSSCG00000012586
ENSG00000101901
ALG13, UDP-N-acetylglucosaminyltransferase subunit
Low tissue specificity
Detected in all
ALKBH2
ENSSSCG00000009940
ENSG00000189046
AlkB homolog 2, alpha-ketoglutarate dependent dioxygenase
Low tissue specificity
Detected in all
ANKAR
ENSSSCG00000016042
ENSG00000151687
Ankyrin and armadillo repeat containing
Tissue enhanced
Detected in many
choroid plexus:
11.1
testis:
16.5
ANKRA2
ENSSSCG00000014070
ENSG00000164331
Ankyrin repeat family A member 2
Low tissue specificity
Detected in all
ANKRD24
ENSSSCG00000013497
ENSG00000089847
Ankyrin repeat domain 24
Low tissue specificity
Detected in all
AP1S2
ENSSSCG00000036074
ENSG00000182287
Adaptor related protein complex 1 sigma 2 subunit
Low tissue specificity
Detected in all
ATP5S
ENSSSCG00000031354
ENSG00000125375
ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B)
Low tissue specificity
Detected in all
BBS10
ENSSSCG00000000523
ENSG00000179941
Bardet-Biedl syndrome 10
Low tissue specificity
Detected in all
C11orf74
ENSSSCG00000035489
ENSG00000166352
Chromosome 11 open reading frame 74
Low tissue specificity
Detected in all
C12orf65
ENSSSCG00000009774
ENSG00000130921
Chromosome 12 open reading frame 65
Low tissue specificity
Detected in all
C17orf75
ENSSSCG00000017733
ENSG00000108666
Protein Njmu-R1
Low tissue specificity
Detected in all
C1GALT1C1L
ENSSSCG00000032888
ENSG00000223658
C1GALT1-specific chaperone 1 like
Low tissue specificity
Detected in many
C8orf48
ENSSSCG00000006972
ENSG00000164743
Chromosome 8 open reading frame 48
Low tissue specificity
Detected in all
CAAP1
ENSSSCG00000005127
ENSG00000120159
Caspase activity and apoptosis inhibitor 1
Low tissue specificity
Detected in all
CAMLG
ENSSSCG00000038955
ENSG00000164615
Calcium signal-modulating cyclophilin ligand
Low tissue specificity
Detected in all
CEP57L1
ENSSSCG00000004391
ENSG00000183137
Centrosomal protein 57 like 1
Tissue enhanced
Detected in all
testis:
20.6
CHAC1
ENSSSCG00000038521
ENSG00000128965
ChaC glutathione specific gamma-glutamylcyclotransferase 1
Tissue enhanced
Detected in all
skin:
29.2
CHODL
ENSSSCG00000012018
ENSG00000154645
Chondrolectin
Tissue enhanced
Detected in all
brain:
67.6
CHRNA6
ENSSSCG00000023338
ENSG00000147434
Cholinergic receptor nicotinic alpha 6 subunit
Group enriched
Detected in all
brain:
55.5
retina:
16.6
CPPED1
ENSSSCG00000024206
ENSG00000103381
Serine/threonine-protein phosphatase CPPED1
Low tissue specificity
Detected in all
CRYZL1
ENSSSCG00000028377
ENSG00000205758
Quinone oxidoreductase-like protein 1
Low tissue specificity
Detected in all
CYP26C1
ENSSSCG00000010474
ENSG00000187553
Cytochrome P450 family 26 subfamily C member 1
Low tissue specificity
Detected in many
DCAF17
ENSSSCG00000015947
ENSG00000115827
DDB1 and CUL4 associated factor 17
Low tissue specificity
Detected in all
DNAJC12
ENSSSCG00000035600
ENSG00000108176
DnaJ heat shock protein family (Hsp40) member C12
Low tissue specificity
Detected in all
DNAJC15
ENSSSCG00000038251
ENSG00000120675
DnaJ heat shock protein family (Hsp40) member C15
Low tissue specificity
Detected in all
DRAXIN
ENSSSCG00000003423
ENSG00000162490
Dorsal inhibitory axon guidance protein
Tissue enhanced
Detected in all
brain:
16.5
ESF1
ENSSSCG00000007077
ENSG00000089048
ESF1 nucleolar pre-rRNA processing protein homolog
Low tissue specificity
Detected in all
FAM174A
ENSSSCG00000014179
ENSG00000174132
Family with sequence similarity 174 member A
Low tissue specificity
Detected in all
FAM69C
ENSSSCG00000039486
ENSG00000187773
Family with sequence similarity 69 member C
Low tissue specificity
Detected in all
FGF23
ENSSSCG00000039492
ENSG00000118972
Fibroblast growth factor 23
Low tissue specificity
Detected in all
FXN
ENSSSCG00000032999
ENSG00000165060
Frataxin
Low tissue specificity
Detected in all
GFM2
ENSSSCG00000014074
ENSG00000164347
G elongation factor mitochondrial 2
Tissue enhanced
Detected in all
epididymis:
38.9
GHDC
ENSSSCG00000017407
ENSG00000167925
GH3 domain-containing protein precursor
Low tissue specificity
Detected in all
GPATCH11
ENSSSCG00000008497
ENSG00000152133
G-patch domain containing 11
Low tissue specificity
Detected in all
GTPBP8
ENSSSCG00000036952
ENSG00000163607
GTP binding protein 8 (putative)
Low tissue specificity
Detected in all
HEATR3
ENSSSCG00000039577
ENSG00000155393
HEAT repeat containing 3
Low tissue specificity
Detected in all
IL29
ENSSSCG00000036439
ENSG00000182393
Interleukin-29 precursor
Low tissue specificity
Detected in many
IQCB1
ENSSSCG00000011881
ENSG00000173226
IQ motif containing B1
Low tissue specificity
Detected in all
ISPD
ENSSSCG00000015358
ENSG00000214960
Isoprenoid synthase domain containing
Tissue enhanced
Detected in all
choroid plexus:
28.9
ITM2A
ENSSSCG00000012448
ENSG00000078596
Integral membrane protein 2A
Low tissue specificity
Detected in all
KBTBD4
ENSSSCG00000013227
ENSG00000123444
Kelch repeat and BTB domain containing 4
Low tissue specificity
Detected in all
KCND1
ENSSSCG00000028284
ENSG00000102057
Potassium voltage-gated channel subfamily D member 1
Low tissue specificity
Detected in all
KCNH4
ENSSSCG00000017411
ENSG00000089558
Potassium voltage-gated channel subfamily H member 4
Low tissue specificity
Detected in all
KCTD6
ENSSSCG00000022131
ENSG00000168301
Potassium channel tetramerization domain containing 6
Low tissue specificity
Detected in all
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